Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015928055.1_cds_XP_016475706.1_67609
CDS Infomation

[gene=LOC107797340] [db_xref=GeneID:107797340] [protein=pentatricopeptide repeat-containing protein At1g10910, chloroplastic-like isoform X3] [protein_id=XP_016475706.1] [location=complement(join(20597..20644,22298..22426,22514..22690,23691..24010,24853..24952,39851..39955,55392..55694,55898..56161,66786..66870,67054..67055))] [gbkey=CDS]
Sequence

ATGCTTGGTGAGACGCTTAAAGTACAGGATATGAATGTGATTTTGCGATATTTTGGGAAG
CTAAGTAGACGACAGGAGCTTTCTCAGGTGTTTGATTGGATGCAGCAAAATCAGAAGATC
AATGTTGCATCTTACAGCAGTTATGTAAAGCTAATGGGAAATAGCCTCAGTTCTGTTGAG
GCTTTAGAAATGTACAAAAGCATCAAAGATCGGTCAACAAAGATTAATGTCTCAGTCTGT
AATGCGCTTCTTAGTTGTCTAGTTAAGAACGGAAAATCTGAGAGCAGTCTCAAACTGTTT
ACTCAAATGAAGCGAGATGGTTTAGTACCAGATGTTGTCACATATAGCACGCTTCTTGCA
GGCTGTGCCAAAGTAAAAGATGGATACTGTAAAGCACTAGAGCTGGTTCAGGAGCTGATG
TCTAATGGACTGCTAATGGATAGTGTGACTTATGGGTCGCTTCTTTCGGTATGTGCTTCA
CATAAAGAGTGCAATGAAGCTGAAAAGTACTTTCAGAAGATGAAAGCTGAAGGCCAGTCT
CCTAATGTCTACCACTGTAGCTCTTTGCTTAATGCTTATTCGGTTGATGGAAATTACGAG
AAGGCTGAAGCATTGATTGAAGAAATGAGATCTGCAGGTTTAGTATTAAATAAGGTAGTC
TACACAACTTTGTTGAAGGTATACGTGAAAGGAGGTTTGTTTGAGAAGTCAAAGGAACTA
TTAAAGGAGTTAGAAGCTTTTGGCTATGCTAAGGATGAGATGCCATTTTGTCTCCTAATG
GATGGCCTTGTAAAGTCTGGACATCTTCTTGAAGCAAAATCAGTATTTGATGAGATGATG
GGAAAACATGTGAAAACTGATGGATACTCCTATAGCATTATGATTTCAGCATTCTGCCGC
AGTGGGCTTCTCGAAGATGCAAAGAAATTAGCTTCTGAATTTGAAGAAAAATATGACAAA
TATGATGTAGTTATTTTGAATGCAATGCTCTCTGCCTATTGCAGAGCAGGGGAAATAGAG
AATATAATGAGCATGATGAAGAAGATGGATGACTCTGCAATTAGTCCTGATTGGAATACC
TTTAATATTCTTATAAGATATTTCTGCAAGGAGAAGCTATATTTGCTTGCTTATCGTACC
ATGGAGGACATGCATAGAAAAGGTCACCAGCCAGAGGAGGGACTTTGTTCCTCTTTAATT
TATCATCTTGGTAAGACAGATGCACATTCAGAAGCATTTTCTGTATATAACATGCTGAGA
TATAGCAAAAGAACCATATCCAAATCCCTTCATGAGAAGATTTTGCACATTCTGATTGCT
GGGCGCCTTCTCAAAGATGCTTATGTAGTTGTCAAGGACAATGCAGGATTCATCTCCCGG
CCGGCTATCAAAAGGTTTGCTGTCAACTTCATGAGATCTGGCAATGTAAACTTAATCAAT
GATGTGATGAAGGCCATGCACAGCTCTGGCCACAAGATTGATCAGTGGATTGTTAACTTT
CAAAATGAACGACAAAGTAGGTGGCCAGCCTGA

Peptide Sequence

PEP ID

XP_016475706.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic-like isoform X3 [Nicotiana tabacum]
Sequence

MLGETLKVQDMNVILRYFGKLSRRQELSQVFDWMQQNQKINVASYSSYVKLMGNSLSSVE
ALEMYKSIKDRSTKINVSVCNALLSCLVKNGKSESSLKLFTQMKRDGLVPDVVTYSTLLA
GCAKVKDGYCKALELVQELMSNGLLMDSVTYGSLLSVCASHKECNEAEKYFQKMKAEGQS
PNVYHCSSLLNAYSVDGNYEKAEALIEEMRSAGLVLNKVVYTTLLKVYVKGGLFEKSKEL
LKELEAFGYAKDEMPFCLLMDGLVKSGHLLEAKSVFDEMMGKHVKTDGYSYSIMISAFCR
SGLLEDAKKLASEFEEKYDKYDVVILNAMLSAYCRAGEIENIMSMMKKMDDSAISPDWNT
FNILIRYFCKEKLYLLAYRTMEDMHRKGHQPEEGLCSSLIYHLGKTDAHSEAFSVYNMLR
YSKRTISKSLHEKILHILIAGRLLKDAYVVVKDNAGFISRPAIKRFAVNFMRSGNVNLIN
DVMKAMHSSGHKIDQWIVNFQNERQSRWPA

Transcript Sequence

Gene sequence data has not been registered.